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Version dev (024b3f2ec)

Get started

  • Overview
  • Installation
  • Environment setup
  • Your first script

Running pipelines

  • Command line
  • Configuration
  • Executors
  • Caching and resuming
  • Reports
  • Plugins

Developing pipelines

  • Scripts
  • Working with files
  • Processes
  • Channels
  • Workflows
  • Modules
  • Notifications
  • Secrets
  • Sharing pipelines
  • VS Code integration

Software dependencies

  • Git
  • Containers
  • Conda environments
  • Spack environments
  • Wave containers

Compute & storage

  • Amazon Web Services
  • Amazon S3
  • Azure
  • Google Cloud
  • Kubernetes
  • Fusion file system

Reference

  • Syntax
  • CLI reference
  • Configuration options
  • Environment variables
  • Feature flags
  • Standard library
  • Process reference
  • Channel factories
  • Operators

Updates

  • Updating Nextflow
  • Preparing for strict syntax
  • Migration notes

Contributing

  • Overview
  • Workflow Diagram
  • Packages
  • Plugins

Guides

  • Spot Instance failures and retries
  • Understanding task resource metrics
  • Using Nextflow with Flux
Nextflow is developed by:
Seqera Labs
Nextflow
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© Copyright 2025, Seqera Labs, S.L.

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